Andrew Riha

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icon location California icon location Systems engineer chasing hobbies in bioinformatics and data science

Results 22 issues of Andrew Riha

Populate missing RSIDs

Utilize NCBI's [Variation Services](https://api.ncbi.nlm.nih.gov/variation/v0/) API to populate missing RSIDs. An idea for how this could be performed... For all SNPs in a dataset, lookup RSIDs in batches of 50k SNPs...

enhancement

Consider refactoring `genotype` column

6 comment

Currently, `snps` normalizes data into a dataframe with four columns named `rsid`, `chrom`, `pos`, and `genotype`. `genotype` can either be `np.nan` or a string of length 1 or 2. For...

enhancement