anupullanhi

Hello I am working on RSEM rsem-calculate-expression: rsem-calculate-expression --paired-end --bam -p 8 /home/user/data/Rat/***.sorted.bam /home/user/data/RSEM/ rat_paired_end_quals Error: Warning: The SAM/BAM file declares less reference sequences (955) than RSEM knows (71103)! Please...

Genome Range for chloro

2

Hello, what is the genome range to be given for chloroplast in NOVOPlasty. I am running this pipeline for the first time. There is a difference in base pairs when...

Gain and Loss for WGS

3

Hello, I am working on CNV calling for the WGS sample. I generated .cnr and .cns files using batch and --method wgs option. When ideogram was generated using diagram option,...

Building pipeline in BioInstaller

5

Dear All, How can we build pipeline using BioInstaller after the installation of tools/software? Using the tools mentioned below 1. trimmomatic 2. hisat2 3. samtools 4. feature count 5. DESeq2...

BioInstaller tool installation on bioshiny

1

Hello How can we install tools into Bioshiny using BioInstaller? Can we install all the required tools in one go rather than downloading it separately?  Thanking in advance...

BioInstaller - issue with loading the app in the web server

3

Hello, We were trying to load the app in the web server after the installation of shiny and BioInstaller. We are getting the URL path for loading the page on...