BioInstaller - issue with loading the app in the web server

[anupullanhi]

Hello,

We were trying to load the app in the web server after the installation of shiny and BioInstaller. We are getting the URL path for loading the page on web server, but it is not getting loaded. Please find the attachment of the error we are facing.

Any help regarding this is appreciated.

Thank you!

[Miachol]

You can try to set the parameter host=’18.223.3.233’. Because the function default is only to listen the 127.0.0.1 hostname.

We also recommend you to launch the Shiny application using the https://github.com/openbiox/bioshiny https://github.com/openbiox/bioshiny package:

wget https://raw.githubusercontent.com/openbiox/bioshiny/master/bin/bioshiny_deps_r wget https://raw.githubusercontent.com/openbiox/bioshiny/master/bin/bioshiny_start chmod a+x bioshiny_deps_r chmod a+x bioshiny_start ./bioshiny_deps_r ./bioshiny_start

On Jan 2, 2020, at 21:35, anupullanhi [email protected] wrote:

Hello,

We were trying to load the app in the web server after the installation of shiny and BioInstaller. We are getting the URL path for loading the page on web server, but it is not getting loaded. Please find the attachment of the error we are facing.

https://user-images.githubusercontent.com/54523452/71669446-b007d580-2d92-11ea-8e29-354e9a4358c5.png https://user-images.githubusercontent.com/54523452/71669458-bac26a80-2d92-11ea-8516-1b9773d98754.png Any help regarding this is appreciated.

Thank you!

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[anupullanhi]

We tried the above given commands and came across below given errors.

chmod a+x bioshiny_deps_r chmod a+x bioshiny_start ./bioshiny_deps_r ./bioshiny_start

When we ran BioInstaller::web(auto_create = TRUE, host="18.219.250.45")

Is there any configuration file need to be changed?

Any help regarding this issue is appreciated!

Thank you!

[Miachol]

You need to include the conda in PATH to avoid the 'not found error', and it has no impact on other function of bioshiny.

The second, please confirm the host ip of server-end or just use the 0.0.0.0 to listen all. Moreover, you also need to check the status of firewall or security group of your server.

On Jan 3, 2020, at 13:50, anupullanhi [email protected] wrote:

We tried the above given commands and came across below given errors.

chmod a+x bioshiny_deps_r chmod a+x bioshiny_start ./bioshiny_deps_r ./bioshiny_start

https://user-images.githubusercontent.com/54523452/71708987-a4f88800-2e1a-11ea-942d-0a1668ec1c3b.png When we ran BioInstaller::web(auto_create = TRUE, host="18.219.250.45")

https://user-images.githubusercontent.com/54523452/71708893-2c91c700-2e1a-11ea-8ff0-f371961ed9bb.png Is there any configuration file need to be changed?

Any help regarding this issue is appreciated!

Thank you!

— You are receiving this because you commented. Reply to this email directly, view it on GitHub https://github.com/JhuangLab/BioInstaller/issues/17?email_source=notifications&email_token=AELGLVX6ZB427BZ2ELFEFOLQ33G33A5CNFSM4KCCK5WKYY3PNVWWK3TUL52HS4DFVREXG43VMVBW63LNMVXHJKTDN5WW2ZLOORPWSZGOEIALDOQ#issuecomment-570470842, or unsubscribe https://github.com/notifications/unsubscribe-auth/AELGLVVCL5CPEWVTTBK75I3Q33G33ANCNFSM4KCCK5WA.