vdjmatch issues

ReadtheDocs links not working

Hello, the links to the VDJtools format readthedocs (in the README) section do not appear to be working. Please could you include an example sample in the repo as a...

danobohud

Retaining Subject and cell identifiers when reformating data for VDJdb annotation input

Hi, Is there any way I can retain subjects and cells identifiers when converting TCR data into VDJdb annotation input format? I used the following command line- `java -jar vdjtools-1.2.1/vdjtools-1.2.1.jar...

bk11-lab

another database

1

I don't know if you have noticed http://friedmanlab.weizmann.ac.il/McPAS-TCR/ and they provide another TCR-Epitope.peptide database, which can be downloaded at http://friedmanlab.weizmann.ac.il/McPAS-TCR/session/96c097c9fefe5349ceec7cebd0308804/download/downloadDB?w= I'm wondering if you can combine this database with vdjdb...

suntaosimon