vdjdb-db

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Error when building most recent database

3

Hi, Thanks for generating this dataset, it is a great resource. I previously cloned the database directory from vdjdb-web, but I would like to use the most recent database for...

bpkwee

The difference of MHC A between MHC B

1

Hi! Thanks for your reading! I downloaded MHCII data form VDJdb, and I want to get a pMHC-TCR pair. But there are two MHC type, so which MHC should I...

GuangShuaiWang

PMID:35525797

2

[Lammoglia et al. Rapid single-cell identification of Epstein-Barr virus-specific T-cell receptors for cellular therapy. Cytotherapy 2022](https://pubmed.ncbi.nlm.nih.gov/35525797/) Files supplied by the author: [PMID_35525797_DB.xlsx](https://github.com/antigenomics/vdjdb-db/files/8651986/PMID_35525797_DB.xlsx)

FernandaLammoglia

PDB data

1

V/J/CDR3 and cognate antigens from crystal structures. > N.B. ``reference.id`` in this chuck will point to corresponding publication. If a crystal structure is unpublished, the reference will point to this...

mikessh

[Kloverpris et al. Programmed death-1 expression on HIV-1-specific CD8+ T cells is shaped by epitope specificity, T-cell receptor clonotype usage and antigen load. AIDS 2014](https://doi.org/10.1097/qad.0000000000000362)

mikessh

[Watkin et al. Unique influenza A cross-reactive memory CD8 T-cell receptor repertoire has a potential to protect against EBV seroconversion. J Allergy Clin Immunol 2017](https://dx.doi.org/10.1016%2Fj.jaci.2017.05.037)

mikessh

[Smith et al. T cell repertoire remodeling following post-transplant T cell therapy coincides with clinical response. J Clin Invest 2019](https://doi.org/10.1172/jci128323)

iziziz

Commensal-specific TCRs from TCRmini mice

iziziz

Any way/plans to include information about a *lack* of antigen association?

1

I'm curious about whether there is/should be a way for people to report the lack of a specific TCR-pMHC interaction. Obviously sometimes this will occur within the bounds of a...

JamieHeather

Multifactorial heterogeneity of virus-specific T cells and association with the progression of human chronic hepatitis B infection

1

https://www.science.org/doi/pdf/10.1126/sciimmunol.aau6905

mikessh