Leo Lahti

icon indicating a website link http://www.iki.fi/Leo.Lahti icon indicating an email [email protected]

icon company Academic icon location Finland icon location Prof. in Data Science. Department of Computing, University of Turku, Finland. Complex natural and social systems.

Results 463 comments of Leo Lahti

Exporting TreeSE/MAE section

How shall we proceed in order to get this solved - any suggestion?

Exporting TreeSE/MAE section

merge?

Citation for DAA paper

Here note that some DA methods (at least Maaslin2 I think but also others, perhaps aldex or ancombc) do include Wilcoxon test in a well polished form. It might be...

Citation for DAA paper

Also cite the new BIRDMAn DA method?

Citation for DAA paper

Related to #503

Mediation analysis example

Ok.

Integrate new multiomic chapters in the book view

@YihanLiu4023 would you have a chance to update your contributed multiomics chapters to support TreeSE/MAE data structures (the core of OMA)?

Include example on phILR transformation

Also see https://github.com/microbiome/mia/pull/197

Include example on phILR transformation

Bioconductor devel version for philr package is now supporting TreeSE. - Add/update philr example/s in OMA. The [philr vignette](https://github.com/jsilve24/philr/blob/master/vignettes/philr-intro.Rmd) includes an example that could be used. - Consider adding wrapper...

QMP example data

@ShadmanIshraq could you check if it is possible to load the microbial abundance data and sample metadata from this paper, and create script that arranges it into TreeSummarizedExperiment format? If...