Anshuman Mohan
Anshuman Mohan
Just making a note that `odgi extract` is wicked cool and I'd like to implement it in slow-odgi sometime. https://hackmd.io/@AndreaGuarracino/SyhbiKuE2#Lipoprotein-A-graph > ``` > odgi extract -i LPA.og -n 23 -c...
Currently, [calyx_depth.py](https://github.com/cucapra/pollen/blob/main/pollen_py/pollen/depth/calyx_depth.py) generates Calyx code 1. _Without_ the use of the [Calyx eDSL](https://github.com/cucapra/calyx/blob/master/calyx-py/calyx/builder.py) (aka the builder library). 2. _With_ the use of the odgi Python bindings (it's not obvious to...
See tracking issue https://github.com/cucapra/pollen/issues/105
Or, whose odgi is it anyway 1. `slow-odgi` does not strictly need odgi if you just want to run/benchmark it. It does need odgi if you want to run the...
This is a parking lot for slow-odgi things that have gotten some triage but are not going to get done in this current push. - [ ] `groom`. It's quite...
- [x] Carve out benchmarking from testing, so that they can coexist. - [ ] Refactor code so that printing happens separately from the computing, then time just the computation....
> What if we could prove that Pollen DSL programs preserve the semantics of variation graphs? That is, some but not all odgi commands are "logical no-ops," in the sense...
One possible agenda item for future synchronous discussions: shall we take this conversion one step farther and produce _binary_ data (rather than just JSON) for fast software processing? _Originally posted...
We have been zooming along and making quite a few improvements to our queues, and we have decided on a small clutch of TODOs for the magical day when things...
#2067 got us binary heaps, which is super cool. It also got us a small number of scheduling transactions, such that the binary heap plus a scheduling transaction over it...