`slow-odgi 0.n`

[anshumanmohan]

This is a parking lot for slow-odgi things that have gotten some triage but are not going to get done in this current push.

• [ ] groom. It's quite a beast! See here and https://github.com/cucapra/pollen/commit/6c361b2d8fdb29626f2a53bb09d5023d857bd2fa.
• [x] flip. Basic functionality, plus document points of divergence.
• [ ] slow-odgi flip disagrees with odgi flip on graph note5.gfa. See https://github.com/cucapra/pollen/pull/52#issuecomment-1513958802
• [x] #73
• [ ] overlap. We currently implement a straightforward version: a candidate path is queried along its entire length. There exists a more sophisticated version, where we query a particular portion of a path (referenced via a BED file). See https://github.com/cucapra/pollen/issues/32#issuecomment-1499839056
• [x] #23
• [ ] #72
• [ ] Speed it up while still mostly living in Python. @rachitnigam is interested in this as a weekend project.
• [x] More thoughtful storage of handmade files. See https://github.com/cucapra/pollen/pull/50#issuecomment-1507803443
• [x] #71
• [ ] #100