Anil Kumar

Hi, I ran the funannotate train command with RNA-seq data downloaded from NCBI as follows: **sudo funannotate-docker train -i mask_sort_clean_isolate_contigs.fasta -o ./train -l FW.renamed.fastq.gz -r REV.renamed.fastq.gz --species "Trichoderma sp" --strain...

import fasta files

3

Hi, Thank you for making a pipeline for nanopore reads analysis. I have some fasta sequence files from the nanopore sequencer that I want to analyse using the pipeline. I...

Slow basecaller

1

While running dorado v0.8 I got this warning ""Unable to find chunk benchmarks for GPU "Quadro RTX 4000 with Max-Q Design", model [email protected] and chunk size 1728. Full benchmarking will...