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CMD ERROR: stringtie -p 35 ./train/training/hisat2.coordSorted.bam

Open anilchauhanhp9 opened this issue 2 years ago • 0 comments

Hi,

I ran the funannotate train command with RNA-seq data downloaded from NCBI as follows: sudo funannotate-docker train -i mask_sort_clean_isolate_contigs.fasta -o ./train -l FW.renamed.fastq.gz -r REV.renamed.fastq.gz --species "Trichoderma sp" --strain PKRF1 --cpus 35 The command gave an error as "CMD ERROR: stringtie -p 35 ./train/training/hisat2.coordSorted.bam", "Error creating output file ./tmp_nCC1al/stdout.08_07_14:20:48.tmp"

The funannotate test ran successfully without an error. Please help

anilchauhanhp9 avatar Aug 07 '23 15:08 anilchauhanhp9