Angli Xue

icon indicating a website link https://anglixue.github.io/ icon indicating an email [email protected]

icon company Garvan Institute of Medical Research icon location Sydney icon location Hi! I am a postdoc scientist at the Garvan-Weizmann Centre for Cellular Genomics, Garvan Institute of Medical Research.

Results 3 issues of Angli Xue

Highlight one SNP but located in the wrong Chromosome

2 comment

Dear LiLin, I am plotting a circular plot and tried to hight one SNP (rs9906048), which is in CHR 17. However, the figure shows a different location (CHR 19) in...

Standard error of the overdispersion estimates

4 comment

Dear Constantin, I was wondering when estimating the overdispersion by `glmGamPoi::glm_gp()` function, can we extract the standard error of the estimates? Also, when the algorithm shrinks the dispersion, would that...

Run sctransform on the whole object or per cell type

Hi, I wonder if I have a sample with multiple cohorts and batches, would you recommend to run SCTransform on the whole object or separately for each cell type? Which...