Angli Xue

icon indicating a website link https://anglixue.github.io/ icon indicating an email [email protected]

icon company Garvan Institute of Medical Research icon location Sydney icon location Hi! I am a postdoc scientist at the Garvan-Weizmann Centre for Cellular Genomics, Garvan Institute of Medical Research.

Results 5 comments of Angli Xue

Highlight one SNP but located in the wrong Chromosome

Hi Lilin, I also thought of that but double-checked if any duplicated SNP names. I have sent you the data and below is the script I used ``` SNPs="rs9906048" CMplot(data,type="p",plot.type="c",chr.labels=paste("Chr",c(1:22),sep=""),r=0.4,cir.legend=TRUE,ylim=c(0,20),...

error occurred when estimating baseline maxFDR

Hi wzhnku, I also met the same issue as you did. I tried to match the snpid, allele order, and also matched the HapMap3 before running MTAG. However, it still...

error occurred when estimating baseline maxFDR

> > Hi wzhnku, > > I also met the same issue as you did. I tried to match the snpid, allele order, and also matched the HapMap3 before running...

Error in converting h5ad to h5Seurat Error: (converted from warning) Unknown file type: h5ad

Did you load all the required libraries? ``` library(Seurat) library(SeuratData) library(SeuratDisk) ```

Meta-analyze MTAG outputs?

Hi @paturley I am reading this old thread. I was wondering for a typical MTAG result, are the SNP effects still marginal? or they became joint effects which takes LD...