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Scaffold paths with gaps and non-adjacent edges

Open andrewprzh opened this issue 8 years ago • 0 comments

Hi! Is it possible to add support for scaffold paths that contain gaps? E.g. SPAdes outputs .paths files in the following format: NODE_1_length_237713_cov_242.866931 15366-; 13368-,15368-,13368-,14744+; 15696+,13092-,15690+,13092-; 15694+ where semicolon corresponds to a gap (consecutive edges may not be adjacent). Thanks in advance!

andrewprzh avatar Jun 07 '17 14:06 andrewprzh