Andrew Kwok

Was wondering if there are any updates to this as I am getting the exact same problem?

Hello - I am getting the exact same error with matplotlib 3.6.1 despite the fix that is mentioned (#192 )? ``` import upsetplot ImportError: cannot import name 'get_renderer' from 'matplotlib.tight_layout'...

> when acceleration, curvature calculated on pca, it cannot be projected back to original gene expression space for the ranking analyses. you can only visualize the magnitude of each quantity...

I was wondering if these issues were ever fully resolved as I am trying to the package out and running into a similar problem where the nmf function hangs. Specifically,...

I'm experiencing something similar except it's 16 elements rather than 9? `ValueError: Length mismatch: Expected axis has 16 elements, new values have 8 elements`

@michalk8 Thanks for pointing us in the right direction - it works correctly now!

Sorry it seems it isn't entirely working yet. When I read the data in, my obs dataframe gets all NaNs, but if I check my cell_metadata.csv file, it's looks populated...

@giovp Yes very happy to. Is there an email I could share a google drive link to? Many thanks in advance.

Sorry just a quick follow up @giovp @michalk8 was wondering if there was somewhere to share my data with your team to take a look?

@giovp hmm the problem is that the cell metadata file from my MERSCOPE output (running their latest v232 software) doesn't look the same as the ones that are on vizgen's...