Andrea De Micheli

Velocyto on Monocle coordinates

8

Hi, just wondering why show.velocity.on.embedding.cor() would fail on Monocle coordinates? Thank you, Andrea

BPPARAM + on disk handling on images

3

Hello, I've noticed that cytomapper::measureObjects doesn't execute with multiple workers when the images are stored on disk. Only one CPU core seems to be utilized despite running the following line:...

CLI patching and cellpose segmentation + GPU

14

Hi, Just a conceptual suggestion in the CLI tutorial. It would be more intuitive if `sopa segmentation cellpose` can automatically run on all the patches generated by `sopa patchify image`...