Andrea De Micheli

icon company University Children’s Hospital Zürich icon location Zürich, Switzerland icon location Computational biologist | Single-Cell Omics and Tech | Neurooncology | Children’s Hospital Zürich

Results 4 comments of Andrea De Micheli

Velocyto on Monocle coordinates

Thank you for your inputs @mbassalbioinformatics @ZHANGHAO007. I will try that!

Velocyto on Monocle coordinates

Hello again, My monocle data ranges from about -10 to 10 in one dimension and -5 to 5 in the other. Yet I am getting this error while velocyto calculates...

Module request: CellRanger COUNT

Hello @ewels and @edg1983, Fantastic to see this module come to life. Thank you very much for putting this together! Would it be too much work to have the module...

BPPARAM + on disk handling on images

Thanks for your feedback Lasse. I'm not using IMC images and have a custom pipeline for segmentation, and that is why I tried to stay away from Steinbock. `steinbock measure...