Alex Morehead
Alex Morehead
Note that, using BioPython, I was able to parse all of the six ligand chains successfully. With ProDy, it's possible that chain `M` having a different residue name from all...
Apologies, I should clarify, the file was uploaded in my initial message (i.e., here: https://github.com/prody/ProDy/files/14579373/Complex.pdb.txt). You can just rename it to `Complex.pdb`.
Thanks @jamesmkrieger for figuring this out! Is there anything else you need from me on my end to resolve this issue?
@rpowalski, I also am not seeing the `pdb_ligand` directory in the downloaded MOAD archive. This is after trying to download it using `wget` three separate times.
@jsilter, any chance you might be able to confirm the issue we are encountering here?
@a-r-j, IIRC I originally proposed to install `lightning-flash` using `pip install ... --no-dependencies` instead of by listing it as a poetry dependency because it was raising errors when I tried...
Hello! Thank you for expressing interest in our work. We are currently in the process of updating the [DIPS-Plus](https://github.com/BioinfoMachineLearning/DIPS-Plus/tree/main) repository from which we derive this cross-validation dataset. I expect these...
This seems related to what you have found: https://github.com/cch1999/posecheck/blob/main/changelog.md#11---18-01-2024
Related to this, how does EquiFold combine antibody sequence inputs? For example, if I provide `heavy` and `light` sequences as input, how does EquiFold modify the sequence inputs to link...