Moad dataset broken archive

[rpowalski]

Hello Team, I have some trouble with following the dataset loader for the Moad dataset. This line suggests that there should be a directory pdb_ligand in the moad archive.

I downloaded and extracted the archive shared in here, but this directory is missing. To be sure I did it twice on different machines.

Here is what I see when I extracted the archive. Can you please share some advice on this?

[Alain-chavanieu]

I had the same as the download failed twice. Then it was ok . the un tar take time. Howevar, I had another problem when I tried to use NotADirectoryError: [Errno 20] Not a directory: '.....DiffDock/data/BindingMOAD_2020_processed/pdb_protein/._6hd6_1_protein.pdb/._6hd6_1_protein.pdb_protein.pdb'

[amorehead]

@rpowalski, I also am not seeing the pdb_ligand directory in the downloaded MOAD archive. This is after trying to download it using wget three separate times.

[Harper-Hua]

Same here. Couldn't find pdb_ligand.

[amorehead]

@jsilter, any chance you might be able to confirm the issue we are encountering here?

[echen1214]

I also found that pdb_ligand is missing from the BindingMOAD.tar archive. In my experience with the MOAD.py file, the DockGen/processed_files directory contains all of the files needed with a similar naming convention (just add "_ligand.pdb")