Alex Morehead

This appears related to https://github.com/mlcommons/croissant/issues/547, so I am closing this issue.

I am reopening this issue per the NeurIPS organizer's recommendation.

Hi, @JovinLeong. I believe the issue for me is that I'm trying to point to a remote `.zip`/`.tar.gz` archive. Good to know that local paths work though!

I love the initiative here! Thanks for kicking this off. I think Phil will have more thoughts on the web UI

Please see: https://github.com/lucidrains/alphafold3-pytorch/blob/e54c050ce62c449a720ec0cbe327c3da670b9573/alphafold3_pytorch/alphafold3.py#L5861 In short, for polymer (protein, DNA, and RNA) residues, their three residue-specific atom indices are predefined according to each residue's canonical backbone structure. You can read what...

For some reason, `readthedocs` is raising the following build error (that I don't believe my PR has caused): ```bash File "/tmp/pip-build-env-8dnu3z25/normal/lib/python3.9/site-packages/pbr/packaging.py", line 492, in run bs_cmd, 'executable', easy_install.sys_executable) AttributeError: module...

I'm also not sure which path the following "Code check / mypy (pull_request)" error is coming from: ```bash src/lightning/pytorch/plugins/precision/fsdp.py:89: error: "Tensor" not callable [operator] ```

@Borda, I have no idea why `types-pycurl` is flagging the following (last) line of this function: ```python @override def clip_grad_by_norm(self, module: Optional[Module], optimizer: Optimizer, clip_val: Union[int, float]) -> None: #...

I can't seem to identify anything particular to this PR that would be causing the docs checks to fail. In which case, is it alright if we merge this PR...

I believe [this PR](https://github.com/zrqiao/NeuralPLexer/pull/27) addresses the missing plDDT values issue.