Ammar Aziz

Thank you!

That error indicates you're having a connection issue. Check your internet is working, you're not behind a proxy and that port 443 is open.

I also agree that this would be extremely helpful to avian influenza research and surveillance. @corneliusroemer please let me know what I can do to assist. I can start collating...

Coming back to this a year later (nearly to the day...), the `curate` subcommand that is being discussed here https://github.com/nextstrain/augur/issues/860 is a much better approach and I think meets all...

> most people might submit whatever comes out of wf-artic pipeline to GISAID and if such submissions are part of routine sequencing, Unfortunately, we do exactly this :( It's something...

If I may jump in here, if you're looking at expanding the primer checking features of nextclade, it would be super awesome to have the primer checking step as a...

@ivan-aksamentov The above gitlocalize links are broken.

It's back up https://cran.r-project.org/web/packages/ggseqlogo/index.html

There's a better tools (imo) `seqkit` that will perform similar function. Create a file with containing the taxon ids you want, `taxons.txt` eg: ``` 464095 12058 12059 138948 ``` You...

Could anyone explain why this flag was depreciated? It's very handy to silence the `reason:` output of snakemake when building pipelines. A possible explanation is that `--quiet` can now handle...