Ammar Aziz

Yes. As a beginner who was *just* referred to this repo as a good start for python project setup, yes!

In both examples you are annotating the branches, not the tips. I'm not sure what you're trying to do. I think you're trying to collapse and annotate the branches. If...

I'd like to self-assign this issue if it's acceptable. I also noticed `%in%` is not mentioned in the `reference` page: https://swcarpentry.github.io/r-novice-gapminder/reference.html So I might submit this as well during the...

I had this issue but with `blastp`. I found creating a conda env and installing prokka fixed the version issues: conda create -n prokka conda install -c bioconda prokka

That's super cool @brj1 I'll be sure to check it out. What was your approach for plotting consensus view?

How would chaining work for transforming both sequence and metadata? Or is it expected that `transform` would operate on sequences or metadata separately, transform metadata first then apply it to...

Thank you @tsibley. I always worry I am intruding in these discussions! A few things to clarify/add. I like generic arguments, but I have noticed the overall style of `augur`...

When you refer to `record` do you mean data in the fasta file, the metadata row entry or both? I think there needs to be a distinction made between unmatched...

Hi there, I took a look at @ntaft fork. The code works well except there are a few instances when the tips either disappear or the toggle is not reset....

This request is heavily related to https://github.com/nextstrain/ncov/pull/640