Alvar Almstedt

Thank you for the response! Follow-up question: Would this --control-ploidy-bed file just essentially be (very simplified): ``` Chromosome Start End chrX 1 length(chrX) chrY 1 length(chrY) chrM 1 length(chrM) ```...

Thank you! I think I understand a bit better now. Would I be correct in assuming that I do not need a bed file for female samples, as there would...

Hello again Eric! I have generated .binned and .binsize files for 11 exome samples where no disease-causing CNV:s have been found. I am a bit confused again as to how...

You just want to convert the sam output to fastq files? You could try [THIS](https://www.cureffi.org/2013/07/04/how-to-convert-sam-to-fastq-with-unix-command-line-tools/)