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Published 20 hours ago • verified publisher icon alvaralmstedt

unmapped sam to pair end reads

Open bioinfonext opened this issue 5 years ago • 1 comments

Hi,

How I can extract proper pair end read from these sam files

samtools view -S -f4 sample.sam > sample.unmapped.sam

bioinfonext avatar Dec 10 '19 15:12 bioinfonext

You just want to convert the sam output to fastq files? You could try THIS

alvaralmstedt avatar Dec 10 '19 16:12 alvaralmstedt