AGB
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almiheenko
Interactive visualization of assembly graphs
Hi, looks like your github pages site for this project is down: https://almiheenko.github.io/AGB/index.html
Hi! I installed AGB via conda, and then ran my code as followed: `agb.py -i /barcode01/flye/ --assembler=Flye -r reference.fasta` and I got these ``` Running QUAST... No information about contig...
Hi, I installed AGB using bioconda according to your tutorial, but I consistently got the following error: > Parsing ../H13_4/assembly_graph_with_scaffolds.gfa... Finish parsing. Extracting edge sequences from ../H13_4/assembly_graph_with_scaffolds.gfa... Running QUAST... No...
I run abg.py with -r para, `agb.py --graph out_nano/assembly_graph.gfa -a Flye -r ~/ecoli_genome/Ecoli_K12.fasta` and get an error massage ``` Finish parsing. Running QUAST... No information about contig mappings to the...
Just an idea, it would be great to be able to use this as a javascript library installable via npm (similar to how igv.js works) so assembly graphs could be...
Hi: I ran the command : $ agb.py -i assembly/canu -a canu then got the following error: Traceback (most recent call last): File "/home/zhangjun/miniconda3/envs/AGB/bin/agb.py", line 154, in main() File "/home/zhangjun/miniconda3/envs/AGB/bin/agb.py",...
Hello, saving the graph in svg saves a faulty svg file This is the error in the svg `error on line 3 at column 9: Extra content at the end...
