No error but empty result

[zmz1988]

Hi! I installed AGB via conda, and then ran my code as followed:

agb.py -i /barcode01/flye/ --assembler=Flye -r reference.fasta

and I got these

Running QUAST...
No information about contig mappings to the reference genome
Aligning graph edges to the reference...
Building JSON files...
Assembly graph viewer is saved to agb_output/viewer.html

But the viewer.html file is empty! I don't know why. I tried to run QUAST alone, and QUAST works fine. When I installed AGB, I got no error message neither. Could you please help?

Thanks!

[BBBlanca]

Hi zmz,

I am also having the same weird empty result. Did you manage to figure out what went wrong?

Thanks!

Yue

[melparker101]

Hello all,

I am also producing an empty HTML file. Has anyone found a solution?

Thanks Melody