AGB
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reference mode bug
I run abg.py with -r para,
agb.py --graph out_nano/assembly_graph.gfa -a Flye -r ~/ecoli_genome/Ecoli_K12.fasta
and get an error massage
Finish parsing.
Running QUAST...
No information about contig mappings to the reference genome
line 124, in parse_mapping_info
best_aligns[get_match_edge_id(edge_id)][chrom]
KeyError: 'ENA|U00096|U00096.3'
is there anything wrong with the code or the assembly results?
Thanks