Alex Pan issues

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                                            Alex Pan

Low alignment rate for healthy-donor b cells

Bowtie2 seems to return very low VDJ alignment rates for each of my B cells and virtually no VDJ sequences were able to be reconstructed (BCR_summary.txt screenshot linked below). Because...

extract_mapped() function takes 3 arguments when specifying --digGold

Hello! I think I may have found a potential bug in imrep.py while running it using the --digGold -a options: File "/users/tools/imrep/imrep.py", line 1022, in extract_mapped(i,file,k) TypeError: extract_mapped() takes exactly...