Alex Pan

icon location Computational biologist / bioinformatician who thinks deep learning is kinda cool

Results 2 comments of Alex Pan

Low alignment rate for healthy-donor b cells

Ida, Thanks for your response and sorry for the delay. 1) Bowtie 2.3.0 2) I provide pre-trimmed reads (AdapterRemoval) to bracer. There was no HISAT2 filtering 3) I run bracer...

Low alignment rate for healthy-donor b cells

Ida, These are B cells that our collaborator FACSed using (CD19+, CD3-). Here is the link to a couple of fastq files and outputs: https://osu.box.com/s/dnlyvph7tucd6xiltjqbe91c3f5g1pl5 Thank you! Alex