assignPOP

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Hello, It's not an issue, but I have a comprehension problem. In a genepop file, -1 corresponds to 'Nocalling' ; 0 for AA ; 1 for AB ; 2 for...

EmilioEgal

arguments imply differing number of rows

2

Hi Alex, I'm having a similar issue to #13, except with assign.MC. I can run assign.X with the same data frame and it does not error out, but when I...

kwojtusik

Hi and thanks for the great software, Everything has been working well so far (thanks for the documentation!), however, I'm getting an error when I run `assign.matrix` with for specific...

quinn-ca

Loci order in baseline and test data

1

Hello assignPOP team, first of all thanks for this amazing tool. I just have a quick question: do the order of the loci needs to be the same on the...

kikecelemin

Installation not working

2

Hello, When I try to install using install.packages("assignPOP") I get this error: `Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) : there is no package called ‘CVST’` When I try...

malmarayati

accuracy.MC error

12

I have successfully analyzed a dataset with 248 individuals and ca. 9700 loci within assignPop using the kfold method, however, the MC method is giving an error that I'm hoping...

rmpeery

Could not find function "read.Genpop"

2

Hi Alex, I'm using package ‘assignPOP’ version 1.2.2. I can't import my genepop file into R using genin

Nga-Vu-JCU

Data conversion

2

Hi there, I have genind and tried using genind2genpop, converting the file into a "formal class genepop". However, when trying running assign.MC it gives me the error "this S4 class...

jcberny

Problem with read.Structure for fixed SNP loci

2

Hi, I have noticed a problem with the function read.Structure, which doubled the number of row of the DataMatrix (YOUR_LIST_NAME$DataMatrix) compared to the number of individuals (as in YOUR_LIST_NAME$SampleID). I...

biodray

Error in makePSOCKcluster(names = spec, ...) : Cluster setup failed. 1 worker of 1 failed to connect.

1

Hi, I am getting the same error message when using assign.MC() and assign.kfold(): ``` assign.MC(GENEPOP391ind_3_realpop_imputed, train.inds=c(0.5), train.loci=c(0.001, 0.005, 0.05, 0.1, 0.25, 0.5, 1), loci.sample="fst", iterations=30, model="svm", dir="assignPOP_391_3_realpop_imputed_mc/") ``` The error...

PeiwenLi