Alexandru Ioan Voda

Error in `rownames<-`(`*tmp*`, value = genes_step1) : attempt to set 'rownames' on an object with no dimensions

2

SCTransform gives me a very weird error for no apparent reason (data appears to be just fine, attached a reproducible slice). Reproducible example: [exp.rds.zip](https://github.com/satijalab/seurat/files/8661055/exp.rds.zip) ``` exp

SingleR is awesome and really user friendly! Thank you for this! I was wondering whether the expression values in the HPCA and BlueprintENCODE references are normalised by library size? It...

Really cool software! Thanks for developing & maintaining it! The guideline makes it clear strelka2 can be used for **germline** variant calling on RNA-seq data with the `--rna` flag. However,...

Hi! Here's what I was trying to do, the version that works (but doesn't give access to full data): ``` > library(SeuratDisk) Registered S3 method overwritten by 'cli': method from...

LoomR tutorial doesn't seem to work.

4

Hi! Hope this finds you well! Is the LoomR tutorial not up-to-date anymore? Had a bug right in the tutorial: https://satijalab.org/loomR/loomR_tutorial.html ``` > library(loomR) Loading required package: R6 Loading required...

Question: Bulk RNA-seq from nanopore?

1

Hi! Impressive work! I was wondering whether your package would support demultiplexing bulk RNA-seq? And nanopore-based (i.e. not Illumina short) reads? Is support for other genomes (e.g. other mammalians) easily...

Pre-compiled binary error on OSX, also cannot compile

12

Hi! Downloaded a fresh clone of the repo then tried `./snpsea-osx64 --help` and got: ``` dyld[33963]: Library not loaded: /usr/local/lib/libgsl.0.dylib Referenced from: /Users/avoda/Desktop/Snpsea/snpsea/snpsea-master/bin/snpsea-osx64 Reason: tried: '/usr/local/lib/libgsl.0.dylib' (no such file), '/usr/lib/libgsl.0.dylib'...