Andrey Rozenberg

If still relevant: I wrote for myself an R [parser](https://github.com/alephreish/bioformatr) for the hhr format - see function `?read.hhr`. I hope it covers most of the variations in hhr. The output...

Sorry for spamming in this old thread, but I think none of the tools provide a full representation of hhr in tabular format. I added a function to my R...

This can be easily achieved with scaleClade by making the scale parameter dependent on `1 / (ntips - 1)`. Simplified versions of my personal scaling and collapsing functions look as...

If the table content is generated within a web-framework, there is most of the time no reliable way to control how the spaces are arranged. If white space is irrelevant...

I've also come across this issue. `In case of FASTA, the line after ">" is called "description". I could not find any "official" source which states that what goes after...

Same error with `snakemake=7.12.0`

Sure!

I have just discovered the -backtrans option. This is great (!), but the bottleneck is that -backtrans has the same behavior as -in in that it doesn't allow piping. An...

Thanks for the prompt response! A custom database _is_ of course an option, but with the drawback you mention. I think, in a future solution, polymorphisms should be treated basically...

OK, this particular issue affects only xls files and is likely due to the package `readxl` not being included. CSV parsing is a separate issue #7