Andrey Rozenberg

I did not attempt much debugging, the workaround that I found was to pre-calculate the busco step with `funannotate-BUSCO2.py`: ``` mkdir -p funannotate_results_path/annotate_misc $CONDA_PREFIX/lib/python*/site-packages/funannotate/aux_scripts/funannotate-BUSCO2.py \ -i path_to_proteins.faa -m proteins -l...

Hi Shmuel, I've contacted Dr. Katz and got a positive response (we collaborated with Dr. Katz on a different matter several years ago). What would be the next steps? What...

It's an internal stop codon, see [Issue 14](14)

It's a general issue with PATH unrelated to `gffread`. From your first invocation it is evident that you are running `$ ./gffread -h` from the folder in which you built...

It seems that the only "update" needed is just switching to an updated BMS package. Currently, the easiest quick fix is to install BMS system-wide and remove the `lib.loc` argument...

This information is contained in the `--uc` file from `vsearch --cluster_fast`.

Sorry for the delay from my side, will do today.

Hi everyone, please make a look at the current version. Besides, paragraph wrapping and some extra polishing I've added the recent PF2 paper - it seems to be the only...

Hi guys, I'm a bit in a Zeitnot again, will have a look in a week or so.

I've just synced the docx and the md versions. [gitprint](https://gitprint.com/har-wradim/partitionfinder/blob/master/docs/MANUAL.md) has been repaired, but it ignores any links.