Alejandro Gonzales-Irribarren

Question: Is possible to run Octupus with RNA-seq data?

2

Hi guys, I was looking pipelines to detect variant with cancer RNA-seq data (STAR-2pass bam files). After giving a look to opossum-platypus, gatk and DeepVariant pipelines I found Octopus. Is...

Hi @jleechung, I am trying to reproduce part of the proActiv paper by combining different cancer/normal RNA-seq datasets. To identify cancer or pan-cancer associated promoters a batch effect removal is...

NCBIgff2chrom -> gxf2chrom

2

Hi @conchoecia! I developed this: [gxf2chrom](https://github.com/alejandrogzi/gxf2chrom), while thinking about your NCBIgff2chrom.py script! In short, this is a CLI-tool written in Rust that does basically the same exact thing your script...