Question: Is possible to run Octupus with RNA-seq data?

[alejandrogzi]

Hi guys,

I was looking pipelines to detect variant with cancer RNA-seq data (STAR-2pass bam files). After giving a look to opossum-platypus, gatk and DeepVariant pipelines I found Octopus.

Is it possible to use Octopus with RNA-seq data? The pre-processing steps are the same?

Thanks in advance, Alejandro