alan-tracey

Sample not being detected as edited despite evidence of editing in the bam file

1

### Description of the bug I’ve run this pipeline now with a few hundred samples - generally it seems to be working very well. However, I notice that one sample...

N characters introduced into *indels.csv

7

### Description of the bug Hi, I’ve just run crisprseq using the targeted pipeline with a read1.fastq.gz only. I heavily quality filtered the input reads, removing any reads containing N...

### Description of the bug Command executed [/Users/alantracey/.nextflow/assets/nf-core/crisprseq/templates/alignment_summary.py]: #!/usr/bin/env python ############################ #### Summary of alignment #### author: Júlia Mir @mirpedrol #### Released under the MIT license. See git repository (https://github.com/nf-core/crisprseq)...