alan-tracey

Results 4 comments of alan-tracey

Sample not being detected as edited despite evidence of editing in the bam file

In case it helps to see this zoomed in further

N characters introduced into *indels.csv

Hi Júlia In my case I don't think that explains it since I am not using paired end sequencing, rather I am using just R1 (R2 is only used to...

N characters introduced into *indels.csv

Hi Júlia I've checked and there are reads in preprocessing/seqtk that contain 'N's. I have run the pipeline with default settings and --overrepresented. Thanks, Alan On Fri, 19 Jul 2024...

N characters introduced into *indels.csv

It looks like there are N bases with quality not in the input raw fastq files? > Thanks for helping with this debugging :) > > — > Reply to...