Ali Khan

Ah yes there is special CLI syntax for this (since acquisition=value is always interpreted as an exact match). Excerpt from here: https://snakebids.readthedocs.io/en/stable/api/plugins.html#snakebids.plugins.ComponentEdit ``` Filters are specified on the CLI using...

Perhaps could work, though you might run into downstream issues if the bids dataset internally refers to files e.g. inside json sidecards (like with IntendedFor flags for field maps).. Also...

Yes snakebids uses pybids under the hood, but after parsing with pybids it makes it's snakemake-friendly structure (with path and wildcards) -- it is the latter that has these limitations.....

I don't see right now how this would be a general snakebids plugin, but it doesn't actually have to be, e.g. you can define and load any snakebids plugin from...