Ali Khan
Ali Khan
let's table this until maybe v2.1 (or a more stable v2.0)
Yes good idea, I've added one simple test using an s3 uri from openneuro, and also made another minor fix. The test passes locally, but I see now it is...
Ah I see. I wonder if we could use the storage_options dict for this purpose? This is something inherited from fsspec so can be used with universal_pathlib. The api within...
Sounds good will give it a shot, thanks for helping out with this!! If it turns out trickier than expected, wondering if a stopgap solution is just to document that...
did we confirm whether this was a resources issue? (eg extra conda envs taking up more space on local disk, leaving less space for swap?)
Hi José, There are some steps in the workflow right now that do seem to be writing temp files to the output root folder (these are the ones you are...
Many apologies for the delay, summer holidays got in the way of this. If you're still having issues, do you mind pointing me to the script you are using and...
Hi Marianka, Your code has variables I don't know the value of (subject_path, sub_name, output_path, T1w_file), but glad to hear things completed for you. That error message "Wildcard constraints in...
Unfortunately, this specific type of heterogenity in a single bids component (entities missing in some files, e.g. some with session, some without session) is not currently supported with snakebids. There...
btw here is the reference for what kind of filters you can put on the inputs: https://snakebids.readthedocs.io/en/stable/api/internals.html#snakebids.types.InputConfig