Ali Khan

I think maybe the tar file download got interrupted earlier and is now corrupt -- can you try deleting the ...model_best.tar file (from your home directory .cache folder) and re-running?

Yes that seems like an excellent workaround! Actually, could have hippunfold-dev that has the dev dependencies, along with hippunfold as dependencies, then could install with `conda install hippunfold-dev` right?

When you run in conda, don't use --use-singularity, instead use --use-conda Best, Ali ________________________________ From: Jordan DeKraker ***@***.***> Sent: Friday, February 7, 2025 2:14:01 PM To: khanlab/hippunfold ***@***.***> Cc: Ali...

> Thank you! > > Unfortunately I now have a new environment-related Error in rule laynii_layers_equidist > > ``` > LN2_LAYERS: /lib/x86_64-linux-gnu/libm.so.6: version `GLIBC_2.29' not found (required by LN2_LAYERS) >...

@Dhananjhay did you end up making something like hippunfold-dev for conda? An alternative could just be to include a conda env file in the hippunfold root dir that we could...

This is something @Dhananjhay is working on, should include some aspect of this (whatever is feasible) into v2.0

I've also seen this now in a handful of cases , e.g. HCP subject 129028, happens for left hipp. Looking at the laplace beltrami logs, seems like it is having...

ok looking at this case, 1) the matrix being singular is caught as an exception by the script, setting everything to zeros, otherwise we have all nans (neither approach makes...

I am hoping a mesh-based approach would work as this would be the least radical (the other methods you quote were drastically different mesh construction approaches as I recall).. adjusting...

@jordandekraker re: your new PR #503, in my test case with holes (HCP subject 129028, left hipp), this wouldn't solve the problem because the holes are already present in the...