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correcting last bioc workflow error
Some links are not working at the end of [chapter2](https://microbiome.github.io/OMA/docs/devel/pages/04_containers.html). correct those with a correct one as follows and make a PR. [makeTreeSummarizedExperimentFromDADA2](https://microbiome.github.io/mia/reference/makeTreeSEFromDADA2.html) [makeSummarizedExperimentFromBiom](https://microbiome.github.io/mia/reference/makeTreeSEFromBiom.html)
- Replace Hintikka link with https://microbiome.github.io/mia/reference/HintikkaXOData.html and add Tengeler link as https://microbiome.github.io/mia/reference/Tengeler2020.html (see chapter 2 for examplle) - explain the other mia datasets along with Hintikka and Tengeler which are...
Standardize package names, functions and object types throughout OMA. one option is to use _italic_ for _R package names_, `monospaced` for `R functions (tse, assays, colData, altExp, phylo)` and simple...
Package import should be standardised across the book in a way that loads all packages at the bgining of the chapter. One method is to create `load_packages.R` file and source...
automated method that keeps updating the oma_packages csv file
Batch transformations. #429