Ajit Johnson Nirmal

Brilliant work. One of the smoothest new methods that worked in the first try. Well done @ShobiStassen If I were you, I will talk with Alex to get it integrated...

Hi @zeavin-ferguson You should also be able to access the signature by typing `sig` after loading the package. Again `Error in fastCor(t(exp)) : invalid nSplit: 0` is probably due to...

Hi @zeavin-ferguson I just took a look at your data. The expression set should not be scaled data. For correlation to work appropriately, it needs to be in natural scale...

I also notice that you have two cell types with only one gene in the signature and so I recommend doing this- ``` sig

Dear @jluethi and @kevinyamauchi, Thank you very much for your valuable suggestions. I have now incorporated tests for most functions. @jluethi, as most functions (tools) in this package are independent...

Working on your other comments now. Thank you both so much for your time reviewing this work.

``` 36 passed, 16 warnings in 39.23s Name Stmts Miss Cover ------------------------------------------------------------------ scimap/__init__.py 12 2 83% scimap/external/__init__.py 0 0 100% scimap/helpers/__init__.py 8 0 100% scimap/helpers/addROI_omero.py 60 52 13% scimap/helpers/animate.py 185...

@liuyangzzu did you install scimap in a new conda environment? Also what computer platform are you using? thank you.

Got it. Based on GitHub actions it seems to install fine on ubuntu-latest. - `https://github.com/labsyspharm/scimap/actions/runs/8365813694/job/22904562181` what version are you using? Unfortunately, I do not have a Linux system to test.

is there a different system you could test?