Alex H. Wagner, PhD
Alex H. Wagner, PhD
The Kasa EP10 plug is not listed as supported, and does not seem to work with python-kasa.
BWA crashes when running on my PE RNA-seq data. It looks like the failure is caused by a failed assertion [here](https://github.com/lh3/bwa/blob/master/bntseq.c#L444). The logged error is as follows: ``` [M::bwa_idx_load_from_disk] read...
> @ahwagner Here's a whopper. I think we should consider "Text" or "VariationText" to be a universal and ambigous thing that can be used for any "text string" not just...
This is a draft model of the Genotype class that was refined and tested during the ISMB 2022 VRS Hackathon. This draft addresses #393. TODO: add maturity labels to classes.
@larrybabb and @rrfreimuth agree that Genotype.count is not an ideal term due to confusion with GenotypeMember.count Other terms considered include `ploidy` and `somy` but no clear term exists for this...
>Is a line like this needed above the GenotypeMembers section to make the linkage work? _Originally posted by @larrybabb in https://github.com/ga4gh/vrs/pull/394#discussion_r925519661_ We need to add an anchor for refs to...
> @ahwagner should we mark "CopyNumber" obsolete and make an annotation about the forthcoming Absolute and Relative CopyNumber? I know this is all about Genotype, but maybe there's an opportunity...
>Yep. Looks like Sphinx 4.x would be insulated against the change BTW: sphinx-doc/sphinx@e5c905c9617d3e10d6b37d6548761c9f1ceb48b9. _Originally posted by @jmarshall in https://github.com/ga4gh/vrs/issues/387#issuecomment-1077754685_
#277 discusses RelativeCopyNumber but focuses mostly on the way of expressing the relative copies, not the subject of the copies themselves. RelativeCopyNumber: There is a systemic gain, loss, or neutral...
Revisit Relative CopyNumber statements, as seen in cytogenetics resources and WRT X-chromosome abnormalities.