Anne

I'm encountering the same problem. I also tried the suggestions in #53 but so far I didn't get it to work.

Hello, I used the [scMultiome analysis vignette](https://github.com/quadbiolab/scMultiome_analysis_vignette/blob/fd3d96d86e0eeb4eab84db5acd272dd0731901b4/Tutorial.md) on our unpublished data in which in Step3 a gene regulatory network reconstruction is performed using pando. When I run `infer_grn` I get...

Hi, the bam file should contain about 15,600 cells. I used mode 1a with the region vcf from [here](https://sourceforge.net/projects/cellsnp/files/SNPlist/). I'm running this on a cluster with cellsnp-lite version 1.2.2. I'm...

Ah ok, the command I used looks like this: `cellsnp-lite -s path/to/possorted_genome_bam.bam -b /path/to/raw_feature_bc_matrix/barcodes.tsv.gz -O /vireo/test -R /vireo/genome1K.phase3.SNP_AF5e2.chr1toX.hg38.vcf.gz -p 20 --minMAF 0.1 --minCOUNT 20 --gzip` Yes indeed, it is a...