Anthony Gitter

icon indicating a website link https://www.biostat.wisc.edu/~gitter/

icon location Associate professor in Biostatistics and Medical Informatics at the University of Wisconsin-Madison; Investigator at the Morgridge Institute for Research

Results 388 comments of Anthony Gitter

Support ROR IDs for author affiliations

Thanks for the really clear and thorough explanation!

Quarto integration

A basic question (that may be answered in the docs I haven't read carefully enough) is whether extensions are pandoc filters or something quarto specific. [Creating filters](https://quarto.org/docs/extensions/filters.html) leads me to...

Is there a more detailed guide?

> I would be willing to document my learning process and maybe write up a noobie guide for non-coder types that could be helpful. This would be nice to have...

Better formatting options

Or format and retrieve citations with [manubot-rootstock](https://github.com/greenelab/manubot-rootstock)

Better formatting options

The original biofiletypes repo is no longer available, but this copy conveys the idea: https://github.com/Nazeeefa/biofiletypes

Better formatting options

The Greene Lab Manubot-based website template is a good option: https://github.com/greenelab/lab-website-template

Create full formatting spec

@yangkky would you want to try to automate some of the citation metadata extraction and formatting? I started thinking about how our [Manubot](https://manubot.org/) tool might be able to take a...

Create full formatting spec

There are a few options for setting this up. All of them would involve listing references in this repository, using Manubot (with pandoc and [CSL](https://citationstyles.org)) to extract and format the...

Create full formatting spec

Yes, with option 1 there is a GitHub repository that contains Markdown files with references and discussions of some or all references. Those are built into HTML and PDF documents...

Create full formatting spec

I've found this repo to be very useful, so I'm returning to this issue to see if there is a way to reduce the maintenance burden. I prototyped a GitHub...