SCope
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aertslab
Fast visualization tool for large-scale and high dimensional single-cell data
Parse metadata on front and request specific clusters from backend rather than `next` and `previous`. Should also implement wrapping around the list in both ways.
Keep GServer dealing with GRPC requests only
> To visualize multiple regions (e.g., a Topic, or an enhancer signature): the > total accessibility can be viewed in the tSNE, similarly as a gene signature > in SCope...
> We have generated multiple scATAC-seq data sets for which scRNA-seq is > also available. New methods have appeared to integrate (warp) such data > sets, such as Seurat v3...
Requires specification
http://iregulon.aertslab.org/
> Develop a new visualization “widget” or frame that shows the query > genomic region (thus links the genomic view with the tSNE view), as a > UCSC or IGV...
> Make new feature types queryable (genomic region, enhancer/promoter, cluster markers, TF motifs). The user can provide one or more regions in a query box, or view BED upload.