VariantSpark
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aehrc
machine learning for genomic variants
Bumps [pyspark](https://github.com/apache/spark) from 3.1.3 to 3.2.2. Commits 78a5825 Preparing Spark release v3.2.2-rc1 ba978b3 [SPARK-39099][BUILD] Add dependencies to Dockerfile for building Spark releases 001d8b0 [SPARK-37554][BUILD] Add PyArrow, pandas and plotly to...
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## Problem We follow the document to run `mvn clean install` but got below message: ``` [ERROR] Failed to execute goal on project variant-spark_2.12: Could not resolve dependencies for project...
Major issues and features addressed in this update - VariantSpark's python wrapper has been refactored to create Random Forest models from a standalone class - Previously, in the non-hail VariantSpark...
This pull request will change the way to install Variant spark: 1. install Hail through `pip install hail==0.2.74` - our scala package of variant spark is not required hail dependency,...
``` $ git log --oneline --no-decorate -1 e34e4be CHORE: Use hardcoded hail-is and change to 0.5.5 $ mvn clean install [INFO] Scanning for projects... Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/central/central-publishing-maven-plugin/0.8.0/central-publishing-maven-plugin-0.8.0.pom Downloaded from...
