adigenova

Hi, Can you share some of the logs and check the size of "/data/Assemblies/wengan/asm.minia.contigs.fa"? Best, Alex

Hi, Thanks for the files, I do see a segfault in the file Pterocarpus.fml.err : ``` Index construction time: 85.172266 seconds for 360113 target sequence(s) Segmentation fault (core dumped) ```...

HI, the issue #47 address this specific question. Best Alex

Hi, It seems that you compiled the code and for enabling large k-mer sizes is necessary to give some flags to minia3. I suggest using directly the code with the...

Hi Kritika, The required step for fixing your issue are: ``` git clone https://github.com/adigenova/seqtk.git cd seqtk make ``` then you will have the function iupac2basesA Best Alex

Hi @rjg2186, is fine to use error-corrected long reads, but perhaps some parameters that are good to tune are: -i 500,1000,2000,3000,4000,5000,6000,7000,8000,10000,15000,20000 -N 3 Best, Alex

Hi, It seems that your job was killed,, are you using a cluster to run the jobs? Best Alex

Wengan can run in a single node of a cluster, we do not support MPI. It seems that the genome that you are assembly is very large, at least when...

Hi bioramg, The most easy way is to download the precompiled binaries available on the release page. Additionally, there is a container in docker that provide the binaries, which can...

Hi Jose, Can you share additional log files or error, from your message I just can infer that the assembly failed at the last step. thanks in advance, Alex