issues with non IUPAC bases

[gargkritika]

Hi Alex,

Thank you for the wonderful program. I am getting the non-IUPAC base error for liger. Based on your previous comments, I installed the seqtk, based on your fork. However, I cannot find the option 'iupac2basesA'

Please suggest a solution for this error.

Thank you Best regards Kritika

[adigenova]

Hi Kritika, The required step for fixing your issue are:

git clone https://github.com/adigenova/seqtk.git
cd seqtk
make 

then you will have the function iupac2basesA

Best Alex