Adam Cornwell

icon indicating an email [email protected]

icon location Rochester, NY, USA icon location BS/MS in bioinformatics, PhD in genetics. Postdoc at St. Jude Children's Research Hospital. Bioinformatics, Genomics, Aging, and tinkering with electronics.

Results 3 issues of Adam Cornwell

Can't draw (draw_circle etc) on grayscale image

1 comment

in drawing.R (https://github.com/dahtah/imager/blob/master/R/drawing.R) for the methods such as draw_circle(), the color to draw in is converted to red, green, and blue values. This then is checked against the length of...

SeuratObject::merge - collapse option mentioned in documentation but not yet implemented

4 comment

Seurat and SeuratObject 5.0.1 installed from CRAN. Attempting to merge SeuratObjects with "collapse=TRUE" results in error "Collapsing layers is not yet supported". I can see also in the current GitHub...

DeepCycle.py assumes umap already run on Anndata object

I pre-processed anndata objects as the existing documentation suggested, but then found the script errored when trying to access UMAP embeddings that didn't exist yet. It would be great to...