acevedol

@saramsey Do you mind looking over this with me when you are available? I'm not sure how to address the problem.

For the latest SRI_testing harness to run, we need to - make a local one-line modification of the source file SRI_testing/translator/sri/testing/processor.py at L50, namely, so that it looks like: `_test_report_database:...

In order to only test the kg2c test triples file in kg2integration, we use `pytest -s -vvv tests/onehop/test_onehops.py --kp_id=rtx-kg2 --x_maturity="development" --ara_id=None`

Failure on `raise_subject_entity`: ``` ======================================== FAILURES ======================================== _____________________ test_trapi_kps[rtx-kg2#0-raise_subject_entity] _____________________ kp_trapi_case = {'biolink_version': '2.2.11', 'idx': 0, 'kp_id': 'infores:rtx-kg2', 'kp_source': 'infores:rtx-kg2', ...} trapi_creator = results_bag = ResultsBag: {'location': 'https://raw.githubusercontent.com/RTXteam/RTX/kg2integration/code/ARAX/KnowledgeSources/RTX_...es:rtx-kg2', 'kp_source_type': 'primary'},...

When testing one edge, all the tests pass except `raise_subject_entity` above. It has an issue with the curie `FMA:72647` not being allowed and (I think) can't convert it to a...

I went over this with @saramsey and he suggested a rough python module that precomputes a specificity index based on the ratio of descendants of a node to the number...

Hi @amykglen, I see the subject score and object score in the publications_info on edges in KG2pre ``` ['CHEMBL.COMPOUND:CHEMBL1201290', 'UMLS:C0304475', 'biolink:close_match', 'infores:atc-codes-umls|infores:semmeddb', 'PMID:27413123', "{'PMID:27413123': {'publication date': '2016 Aug', 'sentence': 'CONCLUSIONS:...